Benjamin Schmid

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B. Schmid

Scientific career

since 2016 PostDoc at the Optical Imaging Center, Friedrich-Alexander-University, Erlangen
2011 - 2016 PostDoc at the Max-Planck-Institute of Molecular Cell Biology and Genetics, Dresden
2010 PostDoc at the Department of Neurobiology and Genetics, University of Würzburg

 

Education

2010             Doctoral Degree at the Department of Neurobiology and Genetics, University of Würzburg
2004 Diploma Degree in Bioinformatics at the University of Applied Sciences Weihenstephan


Publications

Jahr W, Schmid B, Weber M, Huisken J: eduSPIM: Light Sheet Microscopy in the Museum PloS one 2016, 11 (8)

Schmid B, Jahr W, Weber M, Huisken J: Software Framework for Controlling Unsupervised Scientific Instruments PloS one 2016, 11 (8)

Jahr W, Schmid B, Schmied C, Fahrbach FO, Huisken J: Hyperspectral light sheet microscopy Nat comm 2015, 6

Yoshii T, Hermann-Luibl C, Kistenpfennig C, Schmid B, Tomioka K, Helfrich- Förster C: Cryptochrome-Dependent and -Independent Circadian Entrainment Circuits in Drosophila J Neurosc 2015, 35(15)

Schmid B, Huisken J: Real-time multi-view deconvolution Bioinformatics 2015, 31(20)

Bassi A, Schmid B, Huisken J: Optical tomography complements light sheet microscopy for in toto imaging of zebrafish development Development 2015, 142(5)

Mickoleit M, Schmid B, Weber M, Fahrbach FO, Hombach S, Reischauer S, Huisken J: High-resolution reconstruction of the beating zebrafish heart Nat meth 2014

Fahrbach FO, Voigt FF, Schmid B, Helmchen F, Huisken J: Rapid 3D light-sheet microscopy with a tunable lens Optics express 2013, 21(18)

Schmid B, Shah G, Scherf N, Weber M, Thierbach K, Campos C, Roeder I, Aanstad P, Huisken J: High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics Nat comm 2013, 4.

Nuwal N, Stock P, Hiemeyer J, Schmid B, Fiala A, Buchner E: Avoidance of heat and attraction to optogenetically induced sugar sensation as operant behavior in adult Drosophila J Neurogenet 2012, 26(3-4).

Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Harten- stein V, Eliceiri K, Tomancak P, Cardona A: Fiji: an open-source platform for biological-image analysis Nat Methods 2012, 9(7).

Bywalez W, Menegazzi P, Rieger D, Schmid B, Helfrich-Förster C, Yoshii T: The dual-oscillator system of Drosophila melanogaster under natural-like temperature cycles Chronobiol Int 2012, 29(4).

Schmid B, Helfrich-Förster C, Yoshii T: A new ImageJ plug-in ”ActogramJ” for chronobiological analyses J Biol Rhythms 2011, 26(5).

Michels B, Chen YC, Saumweber T, Mishra D, Tanimoto H, Schmid B, Engmann O, Gerber B: Cellular site and molecular mode of synapsin action in associative learning. Learn Mem 2011, 18(5)

Schmid B, Schindelin J, Cardona A, Longair M, Heisenberg M: A high-level 3D visualization API for Java and ImageJ BMC Bioinformatics 2010, 11:274.

Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V: An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy PLoS Biol 2010, 8(10).

Doube M, Kosowski MM, Arganda-Carreras I, Cordelieres F, Dougherty RP, Jackson J, Schmid B, Hutchinson JR, Shefelbine SJ: BoneJ: free and extensible bone image analysis in ImageJ Bone 2010, 47:1076-9.

Facius A, Engelbrecht C, Birzele F, Groscurth A, Schmid B, Wanka S, Mewes W: Prime: a graphical user interface for integrating genomic/proteomic databases Proteomics 2004, 5:76-80.