Benjamin Schmid

Suche


B. Schmid


Scientific career


2016               Scientific Staff, Optical Imaging Center, Friedrich-Alexander-University, Erlangen
2011 - 2016    PostDoc at the Max-Planck-Institute of Molecular Cell Biology and Genetics, Dresden
2010               PostDoc at the Department of Neurobiology and Genetics, University of Würzburg

 
Education


2010               Doctoral Degree at the Department of Neurobiology and Genetics, University of Würzburg
2004               Diploma Degree in Bioinformatics at the University of Applied Sciences Weihenstephan

Publications

Mohamed Z H, Rhein C, Schmid B, Tripal P, Kornhuber J, Arenz C: Synthesis and characterization of a new two photon excitable acid sphingomyelinase FRET probe  Bioorg Med Chem 2021

Schmid B, Tripal P, Winter Z, Palmisano R: 3Dscript. server: True server-side 3D animation of microscopy images using a natural language-based syntax Bioinformatics 2021

Wartchow, Schmid B, Tripal P, Stadlbauer A, Buchfelder M, Gonçalves C-A, Kleindienst A: Treatment with Cyclic AMP Activators Reduces Glioblastoma Growth and Invasion as Assessed by Two-Photon Microscopy Cells 2021

Enderle K, Dinkel M, Spath E-M, Schmid B, Zundler S, Tripal P, Neurath M F, Hildner K, Neufert C: Dynamic Imaging of IEL-IEC Co-Cultures Allows for Quantification of CD103-Dependent T Cell Migration Int J Mol Sci 2021

Regensburger D, Tenkerian C, Pürzer V, Schmid B, Wohlfahrt T, Stolzer I, López-Posadas R, Günther C, Waldner M, Becker C, Sticht H, Petter K, Flierl C, Gass C, Thoenissen T, Geppert C, Britzen-Laurent N, Méniel V, Ramming A, Stürzl M, Naschberger E: Matricellular Protein SPARCL1 Regulates Blood Vessel Integrity and Antagonizes Inflammatory Bowel Disease  Inflamm Bowel Dis 2021

Baier J, Gänsbauer M, Giessler C, Arnold H, Muske M, Schleicher U, Lukassen S, Ekici A, Rauh M, Daniel C, Hartmann A, Schmid B, Tripal P, Dettmer K, Oefner P, Atreya R, Wirtz S, Bogdan C, Mattner J: Arginase expression impedes the resolution of intestinal inflammation by altering the fecal microbiome and the metabolome  J Clin Invest 2020

Shah G, Thierbach K, Schmid B, Waschke J, Reade A, Hlawitschka M, Roeder I, Scherf N, Huisken J: Multi-scale imaging and analysis identify pan-embryo cell dynamics of germlayer formation in zebrafish Nat comm 2019, 10

Heichler C, Scheibe K, Schmied A, Geppert C I, Schmid B, Wirtz S, Thoma O-M, Kramer V, Waldner M J, Büttner C, Farin H, Pešić M, Knieling F, Merkel S, Grüneboom A, Gunzer M, Grützmann R, Rose-John S, Koralov S, Kollias G, Vieth M, Hartmann A, Greten F, Neurath M F, Neufert C: STAT3 activation through IL-6/IL-11 in cancer-associated fibroblasts promotes colorectal tumour development and correlates with poor prognosis Gut 2019

Langer V, Vivi E, Regensburger D, Winkler TH, Waldner MJ, Rath T, Schmid B, Skottke L, Lee S, Jeon NL, Wohlfahrt T, Kramer V, Tripal P, Schumann M, Kersting S, Handtrack C, Geppert CI, Suchowski K, Adams RH, Becker C, Ramming A, Naschberger E, Britzen-Laurent N, Stürzl M: IFN-γ drives inflammatory bowel disease pathogenesis through VE-cadherin-directed vascular barrier disruption J Clin Invest 2019

Schmid B, Tripal P, Fraaß T, Kersten C, Ruder B, Grüneboom A, Huisken J, Palmisano R: 3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax Nat meth 2019

Bardenbacher M, Ruder B, Britzen-Laurent N, Schmid B, Waldner M, Naschberger E, Scharl M, Müller W, Günther C, Becker C, Stürzl M, Tripal P: Permeability analyses and three dimensional imaging of interferon gamma-induced barrier disintegration in intestinal organoids Stem Cell Res 2019

Reshetnikov V, Daum S, Janko C, Karawacka W, Tietze R, Alexiou C, Paryzhak S, Dumych T, Bilyy R, Tripal P, Schmid B, Palmisano R, Mokhir A: ROS‐Responsive N‐Alkylaminoferrocenes for Cancer‐Cell‐Specific Targeting of Mitochondria Angewandte Chemie 2018, 130 (37)

Hahn J, Schauer C, Czegley C, Kling L, Petru L, Schmid B, Weidner D, Reinwald C, Biermann M, Blunder S, Ernst J, Lesner A, Bäuerle T, Palmisano R, Christiansen S, Herrmann M, Bozec A, Gruber R, Schett G, Hoffmann M: Aggregated neutrophil extracellular traps resolve inflammation by proteolysis of cytokines and chemokines and protection from antiproteases The FASEB Journal 2018

Karch S, Broichhagen J, Schneider J, Böning D, Hartmann S, Schmid B, Tripal P, Palmisano R, Alzheimer C, Johnsson K, Huth T: A New Fluorogenic Small-Molecule Labeling Tool for Surface Diffusion Analysis and Advanced Fluorescence Imaging of β-Site Amyloid Precursor Protein-Cleaving Enzyme 1 Based on Silicone Rhodamine: SiR-BACE1 J Med Chem 2018, 64 (14)

Kadala A, Sotelo-Hitschfeld P, Ahmad Z, Tripal P, Schmid B, Mueller A, Bernal L, Winter Z, Brauchi S, Lohbauer U, Messlinger K, Lennerz JK, Zimmermann K: Fluorescent Labeling and 2-Photon Imaging of Mouse Tooth Pulp Nociceptors J Dent Res 2017

Jahr W, Schmid B, Weber M, Huisken J: eduSPIM: Light Sheet Microscopy in the Museum PloS one 2016, 11 (8)

Schmid B, Jahr W, Weber M, Huisken J: Software Framework for Controlling Unsupervised Scientific Instruments PloS one 2016, 11 (8)

Jahr W, Schmid B, Schmied C, Fahrbach FO, Huisken J: Hyperspectral light sheet microscopy Nat comm 2015, 6

Yoshii T, Hermann-Luibl C, Kistenpfennig C, Schmid B, Tomioka K, Helfrich- Förster C: Cryptochrome-Dependent and -Independent Circadian Entrainment Circuits in Drosophila J Neurosc 2015, 35(15)

Schmid B, Huisken J: Real-time multi-view deconvolution Bioinformatics 2015, 31(20)

Bassi A, Schmid B, Huisken J: Optical tomography complements light sheet microscopy for in toto imaging of zebrafish development Development 2015, 142(5)

Mickoleit M, Schmid B, Weber M, Fahrbach FO, Hombach S, Reischauer S, Huisken J: High-resolution reconstruction of the beating zebrafish heart Nat meth 2014

Fahrbach FO, Voigt FF, Schmid B, Helmchen F, Huisken J: Rapid 3D light-sheet microscopy with a tunable lens Optics express 2013, 21(18)

Schmid B, Shah G, Scherf N, Weber M, Thierbach K, Campos C, Roeder I, Aanstad P, Huisken J: High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics Nat comm 2013, 4.

Nuwal N, Stock P, Hiemeyer J, Schmid B, Fiala A, Buchner E: Avoidance of heat and attraction to optogenetically induced sugar sensation as operant behavior in adult Drosophila J Neurogenet 2012, 26(3-4).

Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Harten- stein V, Eliceiri K, Tomancak P, Cardona A: Fiji: an open-source platform for biological-image analysis Nat Methods 2012, 9(7).

Bywalez W, Menegazzi P, Rieger D, Schmid B, Helfrich-Förster C, Yoshii T: The dual-oscillator system of Drosophila melanogaster under natural-like temperature cycles Chronobiol Int 2012, 29(4).

Schmid B, Helfrich-Förster C, Yoshii T: A new ImageJ plug-in ”ActogramJ” for chronobiological analyses J Biol Rhythms 2011, 26(5).

Michels B, Chen YC, Saumweber T, Mishra D, Tanimoto H, Schmid B, Engmann O, Gerber B: Cellular site and molecular mode of synapsin action in associative learning. Learn Mem 2011, 18(5)

Schmid B, Schindelin J, Cardona A, Longair M, Heisenberg M: A high-level 3D visualization API for Java and ImageJ BMC Bioinformatics 2010, 11:274.

Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V: An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy PLoS Biol 2010, 8(10).

Doube M, Kosowski MM, Arganda-Carreras I, Cordelieres F, Dougherty RP, Jackson J, Schmid B, Hutchinson JR, Shefelbine SJ: BoneJ: free and extensible bone image analysis in ImageJ Bone 2010, 47:1076-9.

Facius A, Engelbrecht C, Birzele F, Groscurth A, Schmid B, Wanka S, Mewes W: Prime: a graphical user interface for integrating genomic/proteomic databases Proteomics 2004, 5:76-80.